Resource

Id DNase-seq/ENCSR520BADcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR520BAD [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR520BAD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (54 years)
  • date_created: 2019-08-18T16:57:12.227265+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR520BAD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR520BAD float

DNase-seq_ENCSR520BAD
DNase-seq ENCSR520BAD [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR520BAD [7, 1.57e+04]
n
16,210,820
mean
259
sd
420

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 162108200.50% 107933
chr1 1617765 0.65% 10770
chr2 1304388 0.54% 8680
chr3 1024327 0.52% 6820
chr4 632449 0.33% 4210
chr5 795287 0.44% 5293
chr6 899948 0.53% 5992
chr7 774306 0.49% 5158
chr8 696026 0.48% 4640
chr9 708679 0.51% 4717
chr10 812462 0.61% 5414
chr11 812528 0.60% 5412
chr12 754978 0.57% 5026
chr13 356020 0.31% 2364
chr14 507829 0.47% 3383
chr15 574440 0.56% 3822
chr16 629999 0.70% 4193
chr17 831503 1.00% 5536
chr18 309956 0.39% 2064
chr19 656137 1.12% 4366
chr20 458074 0.71% 3054
chr21 198054 0.42% 1319
chr22 386835 0.76% 2577
chrX 437930 0.28% 2917
chrY 30900 0.05% 206
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107933 30 450 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF461UHI.bed.gz 1.06 MB 010386a5cd9e55ee34fe2648428041bb
ENCFF461UHI.tabix.bed.gz 928.38 KB c6e20a9544d41519bec083a1677d8c72
ENCFF461UHI.tabix.bed.gz.tbi 405.64 KB debe85b3b3c512c632e98254c125342d
genomic_resource.yaml 1.42 KB 7d9d0a88fc91229940eabc88e6247644
statistics/