Resource

Id DNase-seq/ENCSR518YYXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR518YYX [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
Description
Labels
  • accession: ENCSR518YYX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000502/
  • biosample_summary: Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • date_created: 2021-08-24T22:56:05.963905+00:00
  • date_released: 2021-11-04
  • doi: 10.17989/ENCSR518YYX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR518YYX float

DNase-seq_ENCSR518YYX
DNase-seq ENCSR518YYX [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR518YYX [0.113, 58.1]
n
15,158,928
mean
5.3
sd
7.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 151589280.47% 78677
chr1 1515268 0.61% 7793
chr2 1096243 0.45% 5769
chr3 834618 0.42% 4326
chr4 548017 0.29% 2874
chr5 702033 0.39% 3687
chr6 887085 0.52% 4593
chr7 694308 0.44% 3653
chr8 592101 0.41% 3134
chr9 644943 0.47% 3349
chr10 693376 0.52% 3612
chr11 775029 0.57% 4034
chr12 766283 0.57% 3907
chr13 307829 0.27% 1600
chr14 517153 0.48% 2690
chr15 502480 0.49% 2660
chr16 600184 0.66% 3074
chr17 880099 1.06% 4483
chr18 265684 0.33% 1393
chr19 910909 1.55% 4605
chr20 426922 0.66% 2234
chr21 174101 0.37% 903
chr22 367812 0.72% 1910
chrX 441364 0.28% 2307
chrY 15087 0.03% 87
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78677 2 920 192.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF260PVK.bed.gz 872.69 KB c9c496d9003b33d8b8d331b2ca1c3776
ENCFF260PVK.tabix.bed.gz 800.66 KB d958d2e4237392ec275ce2ce67edd7ab
ENCFF260PVK.tabix.bed.gz.tbi 316.98 KB 46f86fcc84f47dd38ae9f5aa97978e38
genomic_resource.yaml 1.62 KB 9f42829d423012056d1c8ee4c92da915
statistics/