Resource

Id DNase-seq/ENCSR517NHPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR517NHP [biosample_summary="Homo sapiens muscle of arm tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR517NHP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:40.057878+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR517NHP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR517NHP float

DNase-seq_ENCSR517NHP
DNase-seq ENCSR517NHP [biosample_summary="Homo sapiens muscle of arm tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR517NHP [2, 7.19e+03]
n
26,075,336
mean
97.5
sd
142

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 260753360.81% 173298
chr1 2263592 0.91% 15044
chr2 2157838 0.89% 14347
chr3 1727477 0.87% 11489
chr4 1442516 0.76% 9588
chr5 1530851 0.84% 10168
chr6 1633957 0.96% 10852
chr7 1362846 0.86% 9052
chr8 1279225 0.88% 8498
chr9 1098252 0.79% 7296
chr10 1305346 0.98% 8680
chr11 1258027 0.93% 8366
chr12 1242929 0.93% 8259
chr13 805812 0.70% 5348
chr14 824711 0.77% 5483
chr15 818247 0.80% 5438
chr16 761832 0.84% 5069
chr17 966162 1.16% 6426
chr18 639119 0.80% 4243
chr19 725845 1.24% 4826
chr20 637431 0.99% 4239
chr21 329774 0.71% 2194
chr22 406367 0.80% 2707
chrX 852380 0.55% 5654
chrY 4800 0.01% 32
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 173298 14 450 150.47 150
global segment-length histogram

Files

Filename Size md5
ENCFF099MBG.bed.gz 1.64 MB 826c7a33b0fa8135f4b4787f12ffe6f7
ENCFF099MBG.tabix.bed.gz 1.41 MB bd8c61a60bd65bcf6b567112b3a89821
ENCFF099MBG.tabix.bed.gz.tbi 630.74 KB 72cc325f678112ca4e009ead2d07a1be
genomic_resource.yaml 1.41 KB 5a9cc75192fe73357c3f541d6b9926d9
statistics/