Resource
| Id | DNase-seq/ENCSR515EWI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR515EWI [biosample_summary="Homo sapiens Caki2"] |
| Description |
status: archived biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN367FHL|/analyses/ENCAN367FHL/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR515EWI | float |
DNase-seq_ENCSR515EWI |
DNase-seq ENCSR515EWI [biosample_summary="Homo sapiens Caki2"]
|
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[1, 150] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 17758200 | 0.55% | 127307 |
| chr1 | 1557380 | 0.63% | 11119 |
| chr2 | 1463870 | 0.60% | 10552 |
| chr3 | 1089090 | 0.55% | 7720 |
| chr4 | 868930 | 0.46% | 6221 |
| chr5 | 933640 | 0.51% | 6620 |
| chr6 | 1145320 | 0.67% | 8207 |
| chr7 | 964150 | 0.61% | 7009 |
| chr8 | 815800 | 0.56% | 5815 |
| chr9 | 693310 | 0.50% | 4941 |
| chr10 | 922390 | 0.69% | 6653 |
| chr11 | 751590 | 0.56% | 5322 |
| chr12 | 970980 | 0.73% | 6955 |
| chr13 | 386370 | 0.34% | 2750 |
| chr14 | 488450 | 0.46% | 3481 |
| chr15 | 566530 | 0.56% | 4066 |
| chr16 | 663360 | 0.73% | 4824 |
| chr17 | 814160 | 0.98% | 5877 |
| chr18 | 306860 | 0.38% | 2184 |
| chr19 | 723790 | 1.23% | 5259 |
| chr20 | 522350 | 0.81% | 3781 |
| chr21 | 222580 | 0.48% | 1599 |
| chr22 | 398670 | 0.78% | 2882 |
| chrX | 465060 | 0.30% | 3291 |
| chrY | 23570 | 0.04% | 179 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127307 | 10 | 370 | 139.49 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF860PPF.bed.gz | 1.08 MB | af2deacfe31b085902a71e9d67ac49b6 |
| ENCFF860PPF.tabix.bed.gz | 1.0 MB | 0aa24b2106eac0e6a71b3258ca40b1f4 |
| ENCFF860PPF.tabix.bed.gz.tbi | 462.0 KB | c89c2422257c6d6c5f2a44b7bde28de9 |
| genomic_resource.yaml | 1.25 KB | 115f9b05bbf007b8d0611bcaa5a58c49 |
| statistics/ |
