Resource
| Id | DNase-seq/ENCSR510ITB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR510ITB [biosample_summary="Homo sapiens left lung tissue male embryo (91 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: peaks audit_error: Alignment file {ENCFF626OFZ|/files/ENCFF626OFZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 19680533 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR510ITB | float |
DNase-seq_ENCSR510ITB |
DNase-seq ENCSR510ITB [biosample_summary="Homo sapiens left lung tissue male embryo (91 days)"]
|
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[0.357, 41.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9311085 | 0.29% | 54810 |
| chr1 | 842806 | 0.34% | 4934 |
| chr2 | 746559 | 0.31% | 4419 |
| chr3 | 621337 | 0.31% | 3696 |
| chr4 | 484836 | 0.25% | 2900 |
| chr5 | 523295 | 0.29% | 3140 |
| chr6 | 554445 | 0.32% | 3300 |
| chr7 | 485019 | 0.30% | 2894 |
| chr8 | 430810 | 0.30% | 2550 |
| chr9 | 382974 | 0.28% | 2251 |
| chr10 | 447783 | 0.33% | 2693 |
| chr11 | 473581 | 0.35% | 2787 |
| chr12 | 461191 | 0.35% | 2697 |
| chr13 | 251659 | 0.22% | 1511 |
| chr14 | 296019 | 0.28% | 1742 |
| chr15 | 303445 | 0.30% | 1795 |
| chr16 | 302509 | 0.33% | 1721 |
| chr17 | 388559 | 0.47% | 2251 |
| chr18 | 207271 | 0.26% | 1242 |
| chr19 | 377907 | 0.64% | 1986 |
| chr20 | 227946 | 0.35% | 1342 |
| chr21 | 108458 | 0.23% | 643 |
| chr22 | 157802 | 0.31% | 923 |
| chrX | 226248 | 0.14% | 1340 |
| chrY | 8626 | 0.02% | 53 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54810 | 1 | 720 | 169.88 | 160 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF750EJO.bed.gz | 583.59 KB | 025f9c1fd4e28a085761729a7db987ed |
| ENCFF750EJO.tabix.bed.gz | 515.43 KB | 99be1c6a23e426f44ba1d42bf60c6214 |
| ENCFF750EJO.tabix.bed.gz.tbi | 326.57 KB | 90ab550857b5d85e9624d48d498c6a63 |
| genomic_resource.yaml | 1.82 KB | 35cc07b899aded12a69fd9cf17231a32 |
| statistics/ |
