Resource

Id DNase-seq/ENCSR507DQCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR507DQC [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR507DQC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004992/
  • biosample_summary: Homo sapiens mucosa of descending colon tissue male adult (26 years)
  • date_created: 2019-11-01T17:50:57.802592+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR507DQC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR507DQC float

DNase-seq_ENCSR507DQC
DNase-seq ENCSR507DQC [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (26 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR507DQC [0.0533, 46.8]
n
26,805,202
mean
2.38
sd
3.21

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 268052020.83% 143781
chr1 2626133 1.05% 13950
chr2 2009647 0.83% 10955
chr3 1572549 0.79% 8573
chr4 1139764 0.60% 6266
chr5 1317884 0.73% 7161
chr6 1486712 0.87% 8057
chr7 1321978 0.83% 7147
chr8 1094472 0.75% 5922
chr9 1186025 0.86% 6317
chr10 1289829 0.96% 6964
chr11 1430775 1.06% 7535
chr12 1256918 0.94% 6729
chr13 589383 0.52% 3233
chr14 903060 0.84% 4788
chr15 906468 0.89% 4845
chr16 1026180 1.14% 5487
chr17 1436370 1.73% 7445
chr18 524869 0.65% 2874
chr19 1240586 2.12% 6332
chr20 754518 1.17% 4061
chr21 318083 0.68% 1707
chr22 578092 1.14% 3043
chrX 749556 0.48% 4129
chrY 45351 0.08% 261
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 143781 2 860 186.43 180
global segment-length histogram

Files

Filename Size md5
ENCFF796LSS.bed.gz 1.56 MB 57ba4aafe54bc09f49327f2589e41cb7
ENCFF796LSS.tabix.bed.gz 1.42 MB 3fbff8aa412ad2ee7570101b27bedee9
ENCFF796LSS.tabix.bed.gz.tbi 493.33 KB d37cb4f9cba424cb989171335e4a57fa
genomic_resource.yaml 1.26 KB c862330dc0c97c8234903456810c176b
statistics/