Resource

Id DNase-seq/ENCSR504KZEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR504KZE [biosample_summary="Homo sapiens lung tissue embryo (67 days)"]
Description
Labels
  • accession: ENCSR504KZE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue embryo (67 days)
  • date_created: 2015-09-16T21:42:44.570386+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR504KZE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (67 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR504KZE float

DNase-seq_ENCSR504KZE
DNase-seq ENCSR504KZE [biosample_summary="Homo sapiens lung tissue embryo (67 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR504KZE [2, 1.58e+03]
n
10,761,126
mean
44.3
sd
41.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 107611260.33% 71560
chr1 971185 0.39% 6453
chr2 873621 0.36% 5807
chr3 706634 0.36% 4701
chr4 577912 0.30% 3837
chr5 622545 0.34% 4141
chr6 636154 0.37% 4234
chr7 563053 0.35% 3750
chr8 503096 0.35% 3343
chr9 464023 0.34% 3086
chr10 510256 0.38% 3395
chr11 554232 0.41% 3682
chr12 524313 0.39% 3478
chr13 301024 0.26% 2001
chr14 337050 0.31% 2238
chr15 344305 0.34% 2290
chr16 336000 0.37% 2236
chr17 430529 0.52% 2867
chr18 249921 0.31% 1664
chr19 379738 0.65% 2530
chr20 280185 0.43% 1866
chr21 123750 0.26% 823
chr22 172500 0.34% 1148
chrX 284400 0.18% 1892
chrY 14700 0.03% 98
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71560 5 554 150.38 150
global segment-length histogram

Files

Filename Size md5
ENCFF818WPF.bed.gz 696.06 KB af20522cfad55b0b8d9dc31bf21685c6
ENCFF818WPF.tabix.bed.gz 597.38 KB b95cd63f4015624e192eda97ced84918
ENCFF818WPF.tabix.bed.gz.tbi 396.21 KB 8dadd0b11055c614bea5c2cc85f58d74
genomic_resource.yaml 1.34 KB cfcfaed3c45e2e2a71c75323f9a32728
statistics/