Resource

Id DNase-seq/ENCSR503UNAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR503UNA [biosample_summary="Homo sapiens nephron progenitor cell"]
Description
Labels
  • accession: ENCSR503UNA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000512/
  • biosample_summary: Homo sapiens nephron progenitor cell
  • date_created: 2020-12-11T18:50:48.916870+00:00
  • date_released: 2021-02-27
  • doi: 10.17989/ENCSR503UNA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR503UNA float

DNase-seq_ENCSR503UNA

DNase-seq ENCSR503UNA [biosample_summary="Homo sapiens nephron progenitor cell"]
HISTOGRAM FOR DNase-seq_ENCSR503UNA [0.0733, 44.5]
n
19,740,017
mean
3.32
sd
4.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 197400170.61% 100079
chr1 1888627 0.76% 9445
chr2 1428003 0.59% 7381
chr3 1057784 0.53% 5442
chr4 810644 0.43% 4157
chr5 974847 0.54% 5014
chr6 1069050 0.63% 5394
chr7 998435 0.63% 5078
chr8 844621 0.58% 4357
chr9 881634 0.64% 4473
chr10 945269 0.71% 4875
chr11 1102540 0.82% 5581
chr12 969184 0.73% 4918
chr13 423868 0.37% 2215
chr14 643744 0.60% 3225
chr15 642512 0.63% 3271
chr16 777836 0.86% 3894
chr17 1043243 1.25% 5098
chr18 408527 0.51% 2108
chr19 998841 1.70% 4852
chr20 577380 0.90% 2944
chr21 206566 0.44% 1074
chr22 436233 0.86% 2191
chrX 610247 0.39% 3089
chrY 382 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100079 2 900 197.24 180
global segment-length histogram

Files

Filename Size md5
ENCFF054TLI.bed.gz 1.09 MB 32e4e49255c301c5df3a4a96abda15d8
ENCFF054TLI.tabix.bed.gz 1018.92 KB 504c4dff727c56d67a7d349d9076b94d
ENCFF054TLI.tabix.bed.gz.tbi 399.41 KB 94eff2b08b26496319b764ce871f9266
genomic_resource.yaml 1.18 KB bc09a272c931cf90904407ffd60ecc21
statistics/