Resource
| Id | DNase-seq/ENCSR503UFM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR503UFM [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (77 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (77 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF223HZW|/files/ENCFF223HZW/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR503UFM | float |
DNase-seq_ENCSR503UFM |
DNase-seq ENCSR503UFM [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (77 years)"]
|
 |
[0.059, 17.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 15141632 | 0.47% | 80491 |
| chr1 | 1458767 | 0.59% | 7656 |
| chr2 | 1233814 | 0.51% | 6676 |
| chr3 | 850431 | 0.43% | 4537 |
| chr4 | 528625 | 0.28% | 2852 |
| chr5 | 749885 | 0.41% | 4016 |
| chr6 | 718909 | 0.42% | 3839 |
| chr7 | 737469 | 0.46% | 3952 |
| chr8 | 653435 | 0.45% | 3548 |
| chr9 | 670574 | 0.48% | 3588 |
| chr10 | 804507 | 0.60% | 4358 |
| chr11 | 919113 | 0.68% | 4840 |
| chr12 | 678079 | 0.51% | 3548 |
| chr13 | 285529 | 0.25% | 1579 |
| chr14 | 475953 | 0.44% | 2575 |
| chr15 | 518792 | 0.51% | 2792 |
| chr16 | 587117 | 0.65% | 3110 |
| chr17 | 788569 | 0.95% | 4103 |
| chr18 | 284867 | 0.35% | 1577 |
| chr19 | 757949 | 1.29% | 3740 |
| chr20 | 500990 | 0.78% | 2687 |
| chr21 | 168136 | 0.36% | 899 |
| chr22 | 460853 | 0.91% | 2410 |
| chrX | 308650 | 0.20% | 1604 |
| chrY | 619 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80491 | 3 | 829 | 188.12 | 184 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF782XPH.bed.gz | 877.99 KB | 77a35780f89abb16c33e18b565aa6f35 |
| ENCFF782XPH.tabix.bed.gz | 794.23 KB | 858aed9b1b16f736c3f42eb071e6e4a7 |
| ENCFF782XPH.tabix.bed.gz.tbi | 326.19 KB | d2efc8d3b27c15728e4640615a151304 |
| genomic_resource.yaml | 2.08 KB | dfcfd553069892f095e9100dbe53833c |
| statistics/ |