Resource

Id DNase-seq/ENCSR496UERcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR496UER [biosample_summary="Homo sapiens T-cell male adult (33 years)"]
Description
Labels
  • accession: ENCSR496UER
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (33 years)
  • date_created: 2020-04-12T19:00:04.882287+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR496UER
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR496UER float

DNase-seq_ENCSR496UER

DNase-seq ENCSR496UER [biosample_summary="Homo sapiens T-cell male adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR496UER [0.171, 107]
n
8,381,491
mean
8.32
sd
11.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 83814910.26% 46737
chr1 843912 0.34% 4697
chr2 582470 0.24% 3279
chr3 458912 0.23% 2556
chr4 291003 0.15% 1634
chr5 371064 0.20% 2078
chr6 492947 0.29% 2762
chr7 382057 0.24% 2143
chr8 306192 0.21% 1727
chr9 334350 0.24% 1861
chr10 372257 0.28% 2095
chr11 424601 0.31% 2383
chr12 423139 0.32% 2377
chr13 170120 0.15% 954
chr14 297520 0.28% 1652
chr15 274520 0.27% 1550
chr16 346125 0.38% 1914
chr17 520496 0.63% 2871
chr18 131891 0.16% 739
chr19 544778 0.93% 2922
chr20 242065 0.38% 1376
chr21 102720 0.22% 565
chr22 204392 0.40% 1146
chrX 254114 0.16% 1401
chrY 9846 0.02% 55
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46737 2 760 179.33 180
global segment-length histogram

Files

Filename Size md5
ENCFF549IFG.bed.gz 524.79 KB 3b5b4554214e8abb7af9625ab14232db
ENCFF549IFG.tabix.bed.gz 475.32 KB 3746b370ef2f553b4149c043a0c09819
ENCFF549IFG.tabix.bed.gz.tbi 226.27 KB 147895c4165d233ffc6fbe0a42f3b136
genomic_resource.yaml 1.18 KB 6aa4b0f4390ce6d0c16402a672726ae6
statistics/