Resource

Id DNase-seq/ENCSR495INQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR495INQ [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)"]
Description
Labels
  • accession: ENCSR495INQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0001059/
  • biosample_summary: Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)
  • date_created: 2015-09-16T21:42:08.871361+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR495INQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR495INQ float

DNase-seq_ENCSR495INQ
DNase-seq ENCSR495INQ [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR495INQ [0.191, 53.8]
n
12,813,183
mean
3.62
sd
4.79

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 128131830.40% 71967
chr1 1227842 0.49% 6872
chr2 983394 0.41% 5591
chr3 821596 0.41% 4644
chr4 607059 0.32% 3416
chr5 639788 0.35% 3659
chr6 781626 0.46% 4365
chr7 647766 0.41% 3685
chr8 552260 0.38% 3143
chr9 507129 0.37% 2872
chr10 599344 0.45% 3393
chr11 620874 0.46% 3474
chr12 660956 0.50% 3734
chr13 324160 0.28% 1838
chr14 428701 0.40% 2406
chr15 414616 0.41% 2345
chr16 415750 0.46% 2317
chr17 600303 0.72% 3284
chr18 253739 0.32% 1464
chr19 594642 1.01% 3125
chr20 332473 0.52% 1883
chr21 153564 0.33% 851
chr22 253033 0.50% 1422
chrX 392326 0.25% 2182
chrY 242 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71967 6 720 178.04 180
global segment-length histogram

Files

Filename Size md5
ENCFF646LUT.bed.gz 769.9 KB 6c23b204adcb7e0626b4b1d0272d33cd
ENCFF646LUT.tabix.bed.gz 693.25 KB 40cb0800e3f70c2338d4be584c1fba45
ENCFF646LUT.tabix.bed.gz.tbi 363.02 KB c39505b9230ef4352138cc2a72178403
genomic_resource.yaml 1.9 KB f7d45c0ac30296fab0cd58db5e694ea2
statistics/