Resource

Id DNase-seq/ENCSR494IWJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR494IWJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
Description
Labels
  • accession: ENCSR494IWJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • date_created: 2020-04-20T23:46:06.066991+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR494IWJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR494IWJ float

DNase-seq_ENCSR494IWJ
DNase-seq ENCSR494IWJ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR494IWJ [0.341, 35.2]
n
6,934,221
mean
5.2
sd
4.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 69342210.22% 38081
chr1 717461 0.29% 3936
chr2 481680 0.20% 2676
chr3 391667 0.20% 2179
chr4 245337 0.13% 1346
chr5 308748 0.17% 1723
chr6 404772 0.24% 2230
chr7 319436 0.20% 1765
chr8 256473 0.18% 1422
chr9 288870 0.21% 1573
chr10 300789 0.22% 1669
chr11 355779 0.26% 1936
chr12 363408 0.27% 1988
chr13 142854 0.12% 790
chr14 244558 0.23% 1324
chr15 224706 0.22% 1251
chr16 284798 0.32% 1550
chr17 409508 0.49% 2210
chr18 101958 0.13% 572
chr19 461045 0.79% 2421
chr20 185466 0.29% 1051
chr21 81701 0.17% 457
chr22 168911 0.33% 929
chrX 186955 0.12% 1041
chrY 7341 0.01% 42
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38081 5 680 182.09 180
global segment-length histogram

Files

Filename Size md5
ENCFF638DIE.bed.gz 413.85 KB 51a97a9e3ab9e8c07657830790c8cab9
ENCFF638DIE.tabix.bed.gz 373.05 KB 7d62aedd3452b7c8f74a6435588d5679
ENCFF638DIE.tabix.bed.gz.tbi 209.84 KB fbc5b2d3c4e4f9b181b42532ca3fd908
genomic_resource.yaml 2.42 KB ea4dfcca3e61dd067096b22f76760a86
statistics/