Resource
| Id | DNase-seq/ENCSR493IQY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR493IQY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF968IHM|/files/ENCFF968IHM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 42663282 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR493IQY | float |
DNase-seq_ENCSR493IQY |
DNase-seq ENCSR493IQY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
|
 |
[0.258, 81] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9094142 | 0.28% | 49419 |
| chr1 | 923988 | 0.37% | 4997 |
| chr2 | 635449 | 0.26% | 3417 |
| chr3 | 500094 | 0.25% | 2670 |
| chr4 | 313516 | 0.16% | 1695 |
| chr5 | 396762 | 0.22% | 2171 |
| chr6 | 520473 | 0.30% | 2814 |
| chr7 | 405159 | 0.25% | 2251 |
| chr8 | 327430 | 0.23% | 1814 |
| chr9 | 377227 | 0.27% | 2060 |
| chr10 | 395976 | 0.30% | 2169 |
| chr11 | 456005 | 0.34% | 2492 |
| chr12 | 465098 | 0.35% | 2495 |
| chr13 | 176080 | 0.15% | 947 |
| chr14 | 314184 | 0.29% | 1699 |
| chr15 | 300534 | 0.29% | 1676 |
| chr16 | 390165 | 0.43% | 2136 |
| chr17 | 565512 | 0.68% | 3044 |
| chr18 | 143288 | 0.18% | 787 |
| chr19 | 623352 | 1.06% | 3311 |
| chr20 | 262611 | 0.41% | 1455 |
| chr21 | 107043 | 0.23% | 604 |
| chr22 | 226745 | 0.45% | 1248 |
| chrX | 259830 | 0.17% | 1426 |
| chrY | 7621 | 0.01% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 49419 | 1 | 840 | 184.02 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF922AGQ.bed.gz | 546.5 KB | 89f35cda85296829e7371f85dfe0354d |
| ENCFF922AGQ.tabix.bed.gz | 500.73 KB | 9dcc53645bdc0113d600b6c57939ca4e |
| ENCFF922AGQ.tabix.bed.gz.tbi | 231.27 KB | 855e137668425b53027ce5b89d153e3a |
| genomic_resource.yaml | 2.21 KB | f5e8ab87992dbfb4a43b35562a03973c |
| statistics/ |