Resource

Id DNase-seq/ENCSR489NAMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR489NAM [biosample_summary="Homo sapiens OCI-LY7"]
Description
Labels
  • accession: ENCSR489NAM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0006711/
  • biosample_summary: Homo sapiens OCI-LY7
  • date_created: 2015-03-22T21:31:48.721902+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR489NAM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR489NAM float

DNase-seq_ENCSR489NAM
DNase-seq ENCSR489NAM [biosample_summary="Homo sapiens OCI-LY7"]
 HISTOGRAM FOR DNase-seq_ENCSR489NAM [6, 2.58e+04]
n
19,445,542
mean
321
sd
460

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194455420.60% 129437
chr1 1851994 0.74% 12334
chr2 1528276 0.63% 10169
chr3 1210729 0.61% 8055
chr4 826784 0.43% 5499
chr5 976388 0.54% 6501
chr6 1149603 0.67% 7654
chr7 904157 0.57% 6017
chr8 776859 0.54% 5173
chr9 829314 0.60% 5522
chr10 863339 0.65% 5744
chr11 937875 0.69% 6247
chr12 1012678 0.76% 6735
chr13 465486 0.41% 3097
chr14 672771 0.63% 4476
chr15 615026 0.60% 4099
chr16 721816 0.80% 4808
chr17 988706 1.19% 6581
chr18 362245 0.45% 2413
chr19 893002 1.52% 5943
chr20 543894 0.84% 3618
chr21 233974 0.50% 1560
chr22 479876 0.94% 3195
chrX 545100 0.35% 3627
chrY 55650 0.10% 370
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 129437 4 450 150.23 150
global segment-length histogram

Files

Filename Size md5
ENCFF260PQV.bed.gz 1.26 MB 95cf95fe262888d98fa6b5ecd99fab8e
ENCFF260PQV.tabix.bed.gz 1.08 MB fa48653418373a06554becad876bece4
ENCFF260PQV.tabix.bed.gz.tbi 424.64 KB 9e1f7924383e1e58a59a078cde71f70d
genomic_resource.yaml 1.26 KB 2f1005de7261b0ff5003ea0e98aba1d5
statistics/