Resource

Id DNase-seq/ENCSR486FMFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR486FMF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
Description
Labels
  • accession: ENCSR486FMF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • date_created: 2020-04-18T22:21:50.914949+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR486FMF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR486FMF float

DNase-seq_ENCSR486FMF
DNase-seq ENCSR486FMF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR486FMF [0.29, 76.5]
n
8,819,338
mean
7.85
sd
9.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 88193380.27% 49321
chr1 896206 0.36% 4965
chr2 616953 0.25% 3460
chr3 491521 0.25% 2748
chr4 305949 0.16% 1710
chr5 399392 0.22% 2255
chr6 519817 0.30% 2914
chr7 400643 0.25% 2261
chr8 341489 0.24% 1930
chr9 361299 0.26% 2032
chr10 391971 0.29% 2241
chr11 431009 0.32% 2404
chr12 456181 0.34% 2561
chr13 184783 0.16% 1026
chr14 303526 0.28% 1705
chr15 294253 0.29% 1665
chr16 362273 0.40% 2013
chr17 514141 0.62% 2848
chr18 142270 0.18% 807
chr19 564932 0.96% 3057
chr20 245242 0.38% 1396
chr21 106344 0.23% 586
chr22 213728 0.42% 1193
chrX 275416 0.18% 1544
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49321 7 740 178.82 180
global segment-length histogram

Files

Filename Size md5
ENCFF787KMY.bed.gz 543.0 KB 267012f0bf71d6eec11faa6730d8da02
ENCFF787KMY.tabix.bed.gz 490.4 KB a8554133a30fad6d9d2be162df00e601
ENCFF787KMY.tabix.bed.gz.tbi 243.22 KB f735ffbcc97c529613173138a838c88f
genomic_resource.yaml 2.45 KB 13d0be761c3bc7fcaeeec5c57ba60bd7
statistics/