Resource

Id DNase-seq/ENCSR485UQYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR485UQY [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR485UQY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002078/
  • biosample_summary: Homo sapiens right cardiac atrium tissue male adult (60 years)
  • date_created: 2019-02-01T18:30:18.699695+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR485UQY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR485UQY float

DNase-seq_ENCSR485UQY
DNase-seq ENCSR485UQY [biosample_summary="Homo sapiens right cardiac atrium tissue male adult (60 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR485UQY [0.0292, 68.7]
n
41,571,077
mean
1.87
sd
3.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 415710771.29% 239314
chr1 3763330 1.51% 21517
chr2 2746071 1.13% 16364
chr3 2064912 1.04% 12267
chr4 1559219 0.82% 9398
chr5 1782096 0.98% 10643
chr6 1637188 0.96% 9930
chr7 2136598 1.34% 12413
chr8 1698537 1.17% 9940
chr9 2183572 1.58% 12355
chr10 1911429 1.43% 11044
chr11 2420005 1.79% 13471
chr12 1741317 1.31% 10102
chr13 788015 0.69% 4841
chr14 1351502 1.26% 7724
chr15 1282527 1.26% 7546
chr16 2008500 2.22% 11111
chr17 2682745 3.22% 14858
chr18 659185 0.82% 3966
chr19 2781909 4.75% 15092
chr20 1329033 2.06% 7409
chr21 662673 1.42% 3744
chr22 1587952 3.12% 8725
chrX 760731 0.49% 4615
chrY 32031 0.06% 239
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 239314 1 960 173.71 160
global segment-length histogram

Files

Filename Size md5
ENCFF488JII.bed.gz 2.48 MB 37488c4864153c53290c4f2ead27e821
ENCFF488JII.tabix.bed.gz 2.27 MB 854cb6c2ff7b5093ec7e7bd36568ea8f
ENCFF488JII.tabix.bed.gz.tbi 516.76 KB 9227e0b855f2c34b1e13009d327d0245
genomic_resource.yaml 1.24 KB 5e1d6d6d42d08b2d33c28cd0d377a1ec
statistics/