Resource
| Id | DNase-seq/ENCSR484UAU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN918SCJ|/analyses/ENCAN918SCJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF481EJF|/files/ENCFF481EJF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR484UAU | float |
DNase-seq_ENCSR484UAU |
DNase-seq ENCSR484UAU [biosample_summary="Homo sapiens tibial nerve tissue male adult (37 years)"]
|
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[7, 4.71e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8177613 | 0.25% | 54387 |
| chr1 | 819962 | 0.33% | 5456 |
| chr2 | 620981 | 0.26% | 4130 |
| chr3 | 509130 | 0.26% | 3378 |
| chr4 | 347029 | 0.18% | 2300 |
| chr5 | 414984 | 0.23% | 2757 |
| chr6 | 475928 | 0.28% | 3165 |
| chr7 | 385138 | 0.24% | 2563 |
| chr8 | 358345 | 0.25% | 2387 |
| chr9 | 341075 | 0.25% | 2265 |
| chr10 | 394309 | 0.29% | 2623 |
| chr11 | 430456 | 0.32% | 2864 |
| chr12 | 425670 | 0.32% | 2831 |
| chr13 | 191801 | 0.17% | 1277 |
| chr14 | 276299 | 0.26% | 1841 |
| chr15 | 275795 | 0.27% | 1828 |
| chr16 | 278881 | 0.31% | 1855 |
| chr17 | 396557 | 0.48% | 2644 |
| chr18 | 150872 | 0.19% | 1006 |
| chr19 | 368216 | 0.63% | 2453 |
| chr20 | 224516 | 0.35% | 1497 |
| chr21 | 101979 | 0.22% | 678 |
| chr22 | 158520 | 0.31% | 1054 |
| chrX | 218774 | 0.14% | 1452 |
| chrY | 12396 | 0.02% | 83 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 54387 | 8 | 450 | 150.36 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF127TDY.bed.gz | 547.2 KB | b9da593c96aff328ff8ad62fd4055300 |
| ENCFF127TDY.tabix.bed.gz | 464.77 KB | 69c8dcfedfd5f604d9ed15bae4d1b0ce |
| ENCFF127TDY.tabix.bed.gz.tbi | 278.26 KB | 54579e9481dd548e0d6441a459168b18 |
| genomic_resource.yaml | 2.19 KB | 2daa56b68b592b24c97e5a7d90b8600c |
| statistics/ |
