Resource
| Id | DNase-seq/ENCSR482HQE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR482HQE [biosample_summary="Homo sapiens lung tissue female embryo (108 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN387LLR|/analyses/ENCAN387LLR/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF277GIU|/files/ENCFF277GIU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 43648360 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF581AVY|/files/ENCFF581AVY/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 43418793 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR482HQE | float |
DNase-seq_ENCSR482HQE |
DNase-seq ENCSR482HQE [biosample_summary="Homo sapiens lung tissue female embryo (108 days)"]
|
 |
[1, 1.15e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19923532 | 0.62% | 132484 |
| chr1 | 1759688 | 0.71% | 11703 |
| chr2 | 1632616 | 0.67% | 10856 |
| chr3 | 1320042 | 0.67% | 8768 |
| chr4 | 1080349 | 0.57% | 7184 |
| chr5 | 1160865 | 0.64% | 7712 |
| chr6 | 1217064 | 0.71% | 8091 |
| chr7 | 1033439 | 0.65% | 6873 |
| chr8 | 941523 | 0.65% | 6263 |
| chr9 | 833901 | 0.60% | 5549 |
| chr10 | 1012740 | 0.76% | 6728 |
| chr11 | 978254 | 0.72% | 6507 |
| chr12 | 970906 | 0.73% | 6463 |
| chr13 | 596984 | 0.52% | 3967 |
| chr14 | 607794 | 0.57% | 4037 |
| chr15 | 642157 | 0.63% | 4268 |
| chr16 | 589259 | 0.65% | 3920 |
| chr17 | 790142 | 0.95% | 5259 |
| chr18 | 480038 | 0.60% | 3196 |
| chr19 | 602631 | 1.03% | 4012 |
| chr20 | 501566 | 0.78% | 3338 |
| chr21 | 239250 | 0.51% | 1588 |
| chr22 | 318831 | 0.63% | 2123 |
| chrX | 612593 | 0.39% | 4073 |
| chrY | 900 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 132484 | 26 | 450 | 150.38 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF913NRZ.bed.gz | 1.26 MB | aa53091cde68286fe23c06ab04a858e2 |
| ENCFF913NRZ.tabix.bed.gz | 1.08 MB | eb1191a3cc32d4b7c82cd8723381321a |
| ENCFF913NRZ.tabix.bed.gz.tbi | 555.26 KB | 5f028948c1e96b8eb940dba9cadcee90 |
| genomic_resource.yaml | 2.58 KB | 9699356c7e4cab5ee7fb6c8ed57e2337 |
| statistics/ |