Resource

Id DNase-seq/ENCSR480SNCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR480SNC [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
Description
Labels
  • accession: ENCSR480SNC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000788/
  • biosample_summary: Homo sapiens naive B cell male adult (40 years)
  • date_created: 2021-08-23T23:11:18.455154+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR480SNC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR480SNC float

DNase-seq_ENCSR480SNC
DNase-seq ENCSR480SNC [biosample_summary="Homo sapiens naive B cell male adult (40 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR480SNC [0.0832, 36.8]
n
10,333,827
mean
3.46
sd
3.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103338270.32% 50475
chr1 1010016 0.41% 4898
chr2 723217 0.30% 3538
chr3 562356 0.28% 2773
chr4 370439 0.19% 1822
chr5 469899 0.26% 2274
chr6 628977 0.37% 3029
chr7 495327 0.31% 2436
chr8 393142 0.27% 1933
chr9 410852 0.30% 2038
chr10 448670 0.34% 2191
chr11 532367 0.39% 2628
chr12 537045 0.40% 2585
chr13 198543 0.17% 975
chr14 347833 0.32% 1714
chr15 344398 0.34% 1682
chr16 411943 0.46% 2039
chr17 612370 0.74% 2988
chr18 175897 0.22% 875
chr19 690194 1.18% 3217
chr20 287262 0.45% 1434
chr21 114674 0.25% 577
chr22 249896 0.49% 1254
chrX 305849 0.20% 1517
chrY 12661 0.02% 58
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50475 2 920 204.73 200
global segment-length histogram

Files

Filename Size md5
ENCFF997DUM.bed.gz 562.12 KB b696b45b0c96b59f2b0f8b819069aa25
ENCFF997DUM.tabix.bed.gz 517.22 KB 89352f731a045b5692d228af2a95d8e4
ENCFF997DUM.tabix.bed.gz.tbi 241.43 KB 87126b442de69fdf7bd843d12120e584
genomic_resource.yaml 2.01 KB aee55b93eb2907159d24c55d5d367363
statistics/