Resource

Id DNase-seq/ENCSR477RTPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR477RTP [biosample_summary="Homo sapiens IMR-90"]
Description
Labels
  • accession: ENCSR477RTP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001196/
  • biosample_summary: Homo sapiens IMR-90
  • date_created: 2015-09-16T21:42:15.858522+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR477RTP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR477RTP float

DNase-seq_ENCSR477RTP
DNase-seq ENCSR477RTP [biosample_summary="Homo sapiens IMR-90"]
 HISTOGRAM FOR DNase-seq_ENCSR477RTP [0.0192, 52]
n
44,445,038
mean
1.49
sd
2.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 444450381.38% 241244
chr1 4133653 1.66% 22513
chr2 3875653 1.60% 21049
chr3 3018950 1.52% 16422
chr4 2443371 1.28% 13388
chr5 2646206 1.46% 14337
chr6 2876241 1.68% 15537
chr7 2235049 1.40% 12191
chr8 2140308 1.47% 11596
chr9 1863801 1.35% 10048
chr10 2088659 1.56% 11367
chr11 2275185 1.68% 12242
chr12 2206353 1.66% 11942
chr13 1279599 1.12% 6978
chr14 1404271 1.31% 7637
chr15 1495205 1.47% 8111
chr16 1231149 1.36% 6684
chr17 1728644 2.08% 9334
chr18 1026875 1.28% 5631
chr19 1099114 1.88% 5823
chr20 1016556 1.58% 5515
chr21 520206 1.11% 2778
chr22 684750 1.35% 3743
chrX 1153620 0.74% 6366
chrY 1620 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 241244 3 1020 184.23 180
global segment-length histogram

Files

Filename Size md5
ENCFF800DVI.bed.gz 2.6 MB c8a0040514f69a2e12b3502cfcb0b7ca
ENCFF800DVI.tabix.bed.gz 2.37 MB 757bdc66022c236c20be18f1ea5e2225
ENCFF800DVI.tabix.bed.gz.tbi 667.25 KB 6861f5eba54bfdfc5afca9c588c9286c
genomic_resource.yaml 1.07 KB 57b19d66a017a7d77a7ce406c6ff2ea3
statistics/