Resource

Id DNase-seq/ENCSR474HQWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR474HQW [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
Description
Labels
  • accession: ENCSR474HQW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours
  • date_created: 2020-04-20T23:45:30.115588+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR474HQW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR474HQW float

DNase-seq_ENCSR474HQW
DNase-seq ENCSR474HQW [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR474HQW [0.454, 58]
n
6,484,541
mean
6.84
sd
7.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 64845410.20% 36015
chr1 666932 0.27% 3736
chr2 446006 0.18% 2487
chr3 354368 0.18% 1972
chr4 219722 0.12% 1232
chr5 285128 0.16% 1593
chr6 388593 0.23% 2160
chr7 294041 0.18% 1625
chr8 239202 0.16% 1344
chr9 256929 0.19% 1426
chr10 279930 0.21% 1580
chr11 327655 0.24% 1807
chr12 338779 0.25% 1870
chr13 129776 0.11% 729
chr14 227802 0.21% 1264
chr15 211409 0.21% 1183
chr16 274523 0.30% 1506
chr17 394961 0.47% 2177
chr18 96428 0.12% 547
chr19 457791 0.78% 2452
chr20 184917 0.29% 1043
chr21 73910 0.16% 414
chr22 154489 0.30% 857
chrX 174883 0.11% 975
chrY 6367 0.01% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36015 4 700 180.05 180
global segment-length histogram

Files

Filename Size md5
ENCFF576ESS.bed.gz 395.62 KB 1e32c5426fbc2e8b670c0cd4cf3943f8
ENCFF576ESS.tabix.bed.gz 356.41 KB cd1af2d2d8086b0424e6c624d9a9e617
ENCFF576ESS.tabix.bed.gz.tbi 194.2 KB d37cae74a422d184122a7c66e724354f
genomic_resource.yaml 2.46 KB a2a7ee6f0332a235c5c56cb4d86eeb0d
statistics/