Resource

Id DNase-seq/ENCSR473LSXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR473LSX [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR473LSX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (38 years)
  • date_created: 2020-04-12T18:59:14.532291+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR473LSX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR473LSX float

DNase-seq_ENCSR473LSX
DNase-seq ENCSR473LSX [biosample_summary="Homo sapiens T-cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR473LSX [0.513, 91.4]
n
5,863,565
mean
11.6
sd
12.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58635650.18% 33675
chr1 597531 0.24% 3433
chr2 408630 0.17% 2339
chr3 310302 0.16% 1791
chr4 198869 0.10% 1135
chr5 250807 0.14% 1449
chr6 333292 0.20% 1935
chr7 274247 0.17% 1583
chr8 212257 0.15% 1233
chr9 239011 0.17% 1374
chr10 253842 0.19% 1480
chr11 307173 0.23% 1761
chr12 294692 0.22% 1695
chr13 114999 0.10% 649
chr14 206138 0.19% 1201
chr15 184826 0.18% 1081
chr16 252436 0.28% 1422
chr17 368127 0.44% 2107
chr18 84779 0.11% 500
chr19 430289 0.73% 2372
chr20 161970 0.25% 942
chr21 68580 0.15% 399
chr22 147446 0.29% 863
chrX 156918 0.10% 896
chrY 6404 0.01% 35
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33675 16 600 174.12 160
global segment-length histogram

Files

Filename Size md5
ENCFF541EUP.bed.gz 371.69 KB aceb3df13061549bdcc60e2aefdcda29
ENCFF541EUP.tabix.bed.gz 334.53 KB 9f2a5fef290b6a468b6a5f0c04e7fe78
ENCFF541EUP.tabix.bed.gz.tbi 184.22 KB 913d926959f6b0bbbedae2b49b87104a
genomic_resource.yaml 1.79 KB b955168c64b3d0bf1a6befeee21f399b
statistics/