Resource

Id DNase-seq/ENCSR471RHGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR471RHG [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR471RHG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-20T23:45:33.039903+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR471RHG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR471RHG float

DNase-seq_ENCSR471RHG
DNase-seq ENCSR471RHG [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR471RHG [0.326, 47.7]
n
8,946,498
mean
6.52
sd
6.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89464980.28% 49207
chr1 919780 0.37% 5048
chr2 623563 0.26% 3440
chr3 493291 0.25% 2714
chr4 307684 0.16% 1691
chr5 391666 0.22% 2169
chr6 516095 0.30% 2857
chr7 412271 0.26% 2283
chr8 331044 0.23% 1858
chr9 364989 0.26% 2009
chr10 401781 0.30% 2231
chr11 452799 0.34% 2502
chr12 454907 0.34% 2490
chr13 176754 0.15% 969
chr14 302702 0.28% 1658
chr15 297238 0.29% 1642
chr16 383933 0.42% 2118
chr17 531375 0.64% 2897
chr18 139696 0.17% 782
chr19 618970 1.06% 3270
chr20 262270 0.41% 1471
chr21 99375 0.21% 552
chr22 222420 0.44% 1239
chrX 233534 0.15% 1272
chrY 8361 0.01% 45
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49207 3 760 181.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF525BWN.bed.gz 536.56 KB 4f5d5a6f97b67ef281dbc8e7e1182e5f
ENCFF525BWN.tabix.bed.gz 486.34 KB ce7345752dfcb8541595551b8730a64d
ENCFF525BWN.tabix.bed.gz.tbi 244.37 KB 6b00cf1cc49c2bd56fa4fb4478b94af0
genomic_resource.yaml 2.46 KB cb6062c3dc7dcf03ef12d0812ac5331c
statistics/