Resource

Id DNase-seq/ENCSR470QCEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR470QCE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
Description
Labels
  • accession: ENCSR470QCE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • date_created: 2020-04-19T18:36:58.522808+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR470QCE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR470QCE float

DNase-seq_ENCSR470QCE
DNase-seq ENCSR470QCE [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR470QCE [0.238, 30.6]
n
6,550,888
mean
4.91
sd
4.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65508880.20% 33693
chr1 675066 0.27% 3463
chr2 445276 0.18% 2300
chr3 358042 0.18% 1825
chr4 236122 0.12% 1201
chr5 290834 0.16% 1485
chr6 384069 0.22% 1976
chr7 299965 0.19% 1553
chr8 236059 0.16% 1253
chr9 266127 0.19% 1377
chr10 286486 0.21% 1470
chr11 330370 0.24% 1711
chr12 336065 0.25% 1736
chr13 130803 0.11% 665
chr14 232997 0.22% 1177
chr15 217150 0.21% 1154
chr16 277363 0.31% 1421
chr17 393001 0.47% 2013
chr18 99219 0.12% 526
chr19 455738 0.78% 2266
chr20 175137 0.27% 924
chr21 79548 0.17% 415
chr22 158626 0.31% 820
chrX 179991 0.12% 928
chrY 6834 0.01% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33693 1 780 194.43 191
global segment-length histogram

Files

Filename Size md5
ENCFF401OFY.bed.gz 367.04 KB 775aaad601a0a74389bef7fdb72fc003
ENCFF401OFY.tabix.bed.gz 332.01 KB 01feb54b6166e0a87fa1ccfa35a5d6ea
ENCFF401OFY.tabix.bed.gz.tbi 186.89 KB db067bcee41794e50b7e0a04b62583ac
genomic_resource.yaml 2.78 KB b05b78090c53cdab05aa89e7e70617e0
statistics/