Resource

Id DNase-seq/ENCSR457RVCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR457RVC [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
Description
Labels
  • accession: ENCSR457RVC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (28 years)
  • date_created: 2020-04-12T18:59:14.165850+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR457RVC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (28 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR457RVC float

DNase-seq_ENCSR457RVC
DNase-seq ENCSR457RVC [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR457RVC [0.279, 132]
n
7,926,862
mean
9.72
sd
14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 79268620.25% 43696
chr1 793214 0.32% 4369
chr2 564381 0.23% 3134
chr3 432622 0.22% 2378
chr4 271819 0.14% 1495
chr5 353924 0.19% 1948
chr6 462993 0.27% 2559
chr7 370233 0.23% 2038
chr8 293787 0.20% 1657
chr9 315832 0.23% 1749
chr10 347939 0.26% 1925
chr11 400128 0.30% 2201
chr12 394503 0.30% 2173
chr13 167103 0.15% 909
chr14 276804 0.26% 1535
chr15 253250 0.25% 1417
chr16 329732 0.36% 1817
chr17 489293 0.59% 2687
chr18 126019 0.16% 710
chr19 520652 0.89% 2779
chr20 222402 0.35% 1238
chr21 102702 0.22% 564
chr22 194581 0.38% 1080
chrX 232112 0.15% 1275
chrY 10837 0.02% 59
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43696 20 680 181.41 180
global segment-length histogram

Files

Filename Size md5
ENCFF188HUC.bed.gz 488.21 KB 0679bd51e8de9c3aa3840a36703d9cd1
ENCFF188HUC.tabix.bed.gz 440.27 KB 44d80a622acd7d3cabb783b05c76edde
ENCFF188HUC.tabix.bed.gz.tbi 222.49 KB f10efb2fa02da8107c4d828fe12da683
genomic_resource.yaml 1.79 KB 3858ae53a187050cb8ee0f73f391472c
statistics/