Resource

Id DNase-seq/ENCSR457JOGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR457JOG [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR457JOG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-20T23:45:49.445948+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR457JOG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR457JOG float

DNase-seq_ENCSR457JOG
DNase-seq ENCSR457JOG [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR457JOG [0.123, 58.5]
n
14,242,329
mean
4.46
sd
5.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 142423290.44% 73903
chr1 1438985 0.58% 7399
chr2 1018376 0.42% 5301
chr3 776284 0.39% 4058
chr4 491693 0.26% 2549
chr5 638362 0.35% 3345
chr6 838611 0.49% 4324
chr7 650157 0.41% 3409
chr8 563754 0.39% 2957
chr9 586876 0.42% 3040
chr10 656672 0.49% 3412
chr11 727876 0.54% 3808
chr12 716744 0.54% 3685
chr13 282543 0.25% 1461
chr14 477565 0.45% 2465
chr15 467530 0.46% 2468
chr16 596793 0.66% 3073
chr17 844236 1.01% 4312
chr18 235069 0.29% 1236
chr19 864881 1.48% 4395
chr20 412388 0.64% 2172
chr21 173228 0.37% 916
chr22 361811 0.71% 1890
chrX 405782 0.26% 2146
chrY 16113 0.03% 82
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 73903 1 1040 192.72 180
global segment-length histogram

Files

Filename Size md5
ENCFF993ULY.bed.gz 814.9 KB a7d312e746557c9902d84e14423b1ff1
ENCFF993ULY.tabix.bed.gz 745.44 KB 0142c6a947cc7d5e7f344738191f2cdd
ENCFF993ULY.tabix.bed.gz.tbi 298.55 KB 860eb5e2342d2a466a5b0e0189215a98
genomic_resource.yaml 1.78 KB 1298f1891007bf52440890667f46d6a7
statistics/