Resource

Id DNase-seq/ENCSR457ILWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR457ILW [biosample_summary="Homo sapiens small intestine tissue female embryo (91 days)"]
Description
Labels
  • accession: ENCSR457ILW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue female embryo (91 days)
  • date_created: 2015-09-16T21:42:48.575558+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR457ILW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR457ILW float

DNase-seq_ENCSR457ILW

DNase-seq ENCSR457ILW [biosample_summary="Homo sapiens small intestine tissue female embryo (91 days)"]
HISTOGRAM FOR DNase-seq_ENCSR457ILW [0.274, 15.5]
n
7,443,151
mean
3.31
sd
2.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74431510.23% 38535
chr1 689834 0.28% 3576
chr2 577058 0.24% 2992
chr3 466905 0.24% 2396
chr4 378579 0.20% 1938
chr5 381459 0.21% 1996
chr6 446410 0.26% 2330
chr7 387263 0.24% 2012
chr8 323607 0.22% 1697
chr9 306236 0.22% 1609
chr10 327134 0.24% 1765
chr11 367973 0.27% 1891
chr12 394930 0.30% 2023
chr13 194134 0.17% 1005
chr14 238666 0.22% 1208
chr15 245043 0.24% 1281
chr16 256777 0.28% 1334
chr17 325001 0.39% 1660
chr18 162396 0.20% 875
chr19 387232 0.66% 1814
chr20 194708 0.30% 1022
chr21 81448 0.17% 432
chr22 132116 0.26% 717
chrX 177962 0.11% 960
chrY 280 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38535 1 960 193.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF759BPO.bed.gz 403.03 KB d325b1b500ef3189c23f3b2ebe07d678
ENCFF759BPO.tabix.bed.gz 359.14 KB 944caa655c1c66d491c36cd3ebd85998
ENCFF759BPO.tabix.bed.gz.tbi 220.93 KB 1735468ec9636dc1d48d937f9b23b55f
genomic_resource.yaml 1.85 KB 01983f8345f68a2e783725d78bfe627e
statistics/