Resource
| Id | DNase-seq/ENCSR457ILW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR457ILW [biosample_summary="Homo sapiens small intestine tissue female embryo (91 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (91 days) output_type: peaks audit_warning: Alignment file {ENCFF635JQB|/files/ENCFF635JQB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 21993127 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR457ILW | float |
DNase-seq_ENCSR457ILW |
DNase-seq ENCSR457ILW [biosample_summary="Homo sapiens small intestine tissue female embryo (91 days)"]
|
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[0.274, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7443151 | 0.23% | 38535 |
| chr1 | 689834 | 0.28% | 3576 |
| chr2 | 577058 | 0.24% | 2992 |
| chr3 | 466905 | 0.24% | 2396 |
| chr4 | 378579 | 0.20% | 1938 |
| chr5 | 381459 | 0.21% | 1996 |
| chr6 | 446410 | 0.26% | 2330 |
| chr7 | 387263 | 0.24% | 2012 |
| chr8 | 323607 | 0.22% | 1697 |
| chr9 | 306236 | 0.22% | 1609 |
| chr10 | 327134 | 0.24% | 1765 |
| chr11 | 367973 | 0.27% | 1891 |
| chr12 | 394930 | 0.30% | 2023 |
| chr13 | 194134 | 0.17% | 1005 |
| chr14 | 238666 | 0.22% | 1208 |
| chr15 | 245043 | 0.24% | 1281 |
| chr16 | 256777 | 0.28% | 1334 |
| chr17 | 325001 | 0.39% | 1660 |
| chr18 | 162396 | 0.20% | 875 |
| chr19 | 387232 | 0.66% | 1814 |
| chr20 | 194708 | 0.30% | 1022 |
| chr21 | 81448 | 0.17% | 432 |
| chr22 | 132116 | 0.26% | 717 |
| chrX | 177962 | 0.11% | 960 |
| chrY | 280 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38535 | 1 | 960 | 193.15 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF759BPO.bed.gz | 403.03 KB | d325b1b500ef3189c23f3b2ebe07d678 |
| ENCFF759BPO.tabix.bed.gz | 359.14 KB | 944caa655c1c66d491c36cd3ebd85998 |
| ENCFF759BPO.tabix.bed.gz.tbi | 220.93 KB | 1735468ec9636dc1d48d937f9b23b55f |
| genomic_resource.yaml | 1.85 KB | 01983f8345f68a2e783725d78bfe627e |
| statistics/ |
