Resource

Id DNase-seq/ENCSR453RFWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR453RFW [biosample_summary="Homo sapiens T-helper 1 cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR453RFW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell male adult (24 years)
  • date_created: 2020-05-11T15:49:01.440753+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR453RFW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR453RFW float

DNase-seq_ENCSR453RFW

DNase-seq ENCSR453RFW [biosample_summary="Homo sapiens T-helper 1 cell male adult (24 years)"]
HISTOGRAM FOR DNase-seq_ENCSR453RFW [0.166, 52.3]
n
6,027,299
mean
6.24
sd
6.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 60272990.19% 31397
chr1 627458 0.25% 3211
chr2 397942 0.16% 2082
chr3 300562 0.15% 1550
chr4 213613 0.11% 1086
chr5 247828 0.14% 1282
chr6 333751 0.20% 1739
chr7 271986 0.17% 1410
chr8 234524 0.16% 1261
chr9 250874 0.18% 1327
chr10 243729 0.18% 1278
chr11 330252 0.24% 1763
chr12 302114 0.23% 1570
chr13 107997 0.09% 551
chr14 240027 0.22% 1246
chr15 183896 0.18% 978
chr16 260971 0.29% 1351
chr17 372619 0.45% 1926
chr18 79989 0.10% 416
chr19 446533 0.76% 2275
chr20 166185 0.26% 894
chr21 81570 0.17% 447
chr22 152799 0.30% 826
chrX 173609 0.11% 894
chrY 6471 0.01% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31397 2 800 191.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF130TIL.bed.gz 354.0 KB d1004232da2b9d4a12314f95b4d44818
ENCFF130TIL.tabix.bed.gz 321.47 KB 7a617926e9b3e969dc6f95e9bd5a5045
ENCFF130TIL.tabix.bed.gz.tbi 156.59 KB 264c51d55fa28baf138d37a9d0c30098
genomic_resource.yaml 1.21 KB d75f59306445e9d4e6d2e4e9c022c1e5
statistics/