Resource

Id DNase-seq/ENCSR445XYWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR445XYW [biosample_summary="Homo sapiens right lung tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR445XYW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:52.544333+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR445XYW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR445XYW float

DNase-seq_ENCSR445XYW

DNase-seq ENCSR445XYW [biosample_summary="Homo sapiens right lung tissue female embryo (98 days)"]
HISTOGRAM FOR DNase-seq_ENCSR445XYW [0.114, 28.4]
n
20,163,719
mean
2.31
sd
2.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 201637190.63% 96751
chr1 1820460 0.73% 8686
chr2 1619859 0.67% 7803
chr3 1341099 0.68% 6400
chr4 1030023 0.54% 4968
chr5 1143638 0.63% 5493
chr6 1260760 0.74% 6022
chr7 1047588 0.66% 5061
chr8 922979 0.64% 4432
chr9 860360 0.62% 4123
chr10 1008649 0.75% 4831
chr11 1043319 0.77% 5012
chr12 1003003 0.75% 4779
chr13 569930 0.50% 2739
chr14 634573 0.59% 3024
chr15 661581 0.65% 3171
chr16 607363 0.67% 2917
chr17 817673 0.98% 3886
chr18 465690 0.58% 2244
chr19 705788 1.20% 3236
chr20 502992 0.78% 2456
chr21 219139 0.47% 1092
chr22 317080 0.62% 1571
chrX 559920 0.36% 2803
chrY 253 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96751 1 1160 208.41 200
global segment-length histogram

Files

Filename Size md5
ENCFF089NGX.bed.gz 1.0 MB d7ad5416a948ae1bda8f97bf7b650e12
ENCFF089NGX.tabix.bed.gz 935.15 KB fe12ee03b95e46fb84bb272ecbde07b6
ENCFF089NGX.tabix.bed.gz.tbi 447.49 KB 447b576a0678272a498cfe97fb474c74
genomic_resource.yaml 1.22 KB 937b07020a47560ecb6690dd9291bef5
statistics/