Resource

Id DNase-seq/ENCSR445QDZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR445QDZ [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)"]
Description
Labels
  • accession: ENCSR445QDZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)
  • date_created: 2021-08-23T23:11:18.514054+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR445QDZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (36 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR445QDZ float

DNase-seq_ENCSR445QDZ
DNase-seq ENCSR445QDZ [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (36 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR445QDZ [0.0615, 56.6]
n
12,477,717
mean
3.9
sd
5.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 124777170.39% 60829
chr1 1256897 0.50% 6058
chr2 897559 0.37% 4403
chr3 644057 0.32% 3144
chr4 421051 0.22% 2068
chr5 569063 0.31% 2732
chr6 673454 0.39% 3213
chr7 558593 0.35% 2759
chr8 498332 0.34% 2497
chr9 501454 0.36% 2472
chr10 581616 0.43% 2914
chr11 687657 0.51% 3349
chr12 579190 0.43% 2777
chr13 233851 0.20% 1126
chr14 479502 0.45% 2310
chr15 412469 0.40% 2043
chr16 460255 0.51% 2242
chr17 733584 0.88% 3601
chr18 176881 0.22% 886
chr19 721465 1.23% 3418
chr20 386210 0.60% 1884
chr21 170424 0.36% 828
chr22 385365 0.76% 1937
chrX 431704 0.28% 2088
chrY 17084 0.03% 80
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60829 2 940 205.13 200
global segment-length histogram

Files

Filename Size md5
ENCFF747BLI.bed.gz 675.54 KB 834c801fcea99bbcfe754d217d12780b
ENCFF747BLI.tabix.bed.gz 620.15 KB 4f63583e7b7499732469823c4eef6873
ENCFF747BLI.tabix.bed.gz.tbi 242.56 KB 3bd1b6b9680419e7389af67a3977c8e2
genomic_resource.yaml 1.32 KB 1a4c5b4418dbd0958f72f5836ebd1ff9
statistics/