Resource

Id DNase-seq/ENCSR443YJPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR443YJP [biosample_summary="Homo sapiens MG63"]
Description
Labels
  • accession: ENCSR443YJP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002234/
  • biosample_summary: Homo sapiens MG63
  • date_created: 2019-10-07T16:25:48.992789+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR443YJP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR443YJP float

DNase-seq_ENCSR443YJP

DNase-seq ENCSR443YJP [biosample_summary="Homo sapiens MG63"]
HISTOGRAM FOR DNase-seq_ENCSR443YJP [0.0669, 232]
n
27,668,483
mean
3.73
sd
6.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276684830.86% 156835
chr1 2722541 1.09% 15266
chr2 2219153 0.92% 12729
chr3 1649569 0.83% 9477
chr4 1089881 0.57% 6358
chr5 1661149 0.92% 9437
chr6 1578625 0.92% 9057
chr7 1245695 0.78% 7172
chr8 1605321 1.11% 9141
chr9 1181975 0.85% 6692
chr10 1350614 1.01% 7717
chr11 1382882 1.02% 7802
chr12 1346842 1.01% 7612
chr13 647864 0.57% 3757
chr14 748533 0.70% 4240
chr15 959335 0.94% 5399
chr16 987406 1.09% 5470
chr17 1286430 1.55% 7081
chr18 530350 0.66% 3071
chr19 1022753 1.74% 5473
chr20 790732 1.23% 4447
chr21 336646 0.72% 1911
chr22 555927 1.09% 3059
chrX 718374 0.46% 4160
chrY 49886 0.09% 307
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 156835 6 820 176.42 168
global segment-length histogram

Files

Filename Size md5
ENCFF776STX.bed.gz 1.7 MB 34f1e5ec7aa4ae7f8633c2f466bda2c8
ENCFF776STX.tabix.bed.gz 1.55 MB 29fd7892b01d18a3372cdd88b2b8d520
ENCFF776STX.tabix.bed.gz.tbi 548.38 KB 467fcea642ca1e943ca159e4977ed7c0
genomic_resource.yaml 1.06 KB d1b0ee72c5ad0166581ee60d738aa152
statistics/