Resource

Id DNase-seq/ENCSR440QMRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR440QMR [biosample_summary="Homo sapiens iPS DF 19.7"]
Description
Labels
  • accession: ENCSR440QMR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007095/
  • biosample_summary: Homo sapiens iPS DF 19.7
  • date_created: 2015-09-16T21:42:17.457110+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR440QMR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR440QMR float

DNase-seq_ENCSR440QMR
DNase-seq ENCSR440QMR [biosample_summary="Homo sapiens iPS DF 19.7"]
 HISTOGRAM FOR DNase-seq_ENCSR440QMR [3, 2.26e+03]
n
10,343,299
mean
33.7
sd
31.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103432990.32% 68868
chr1 930833 0.37% 6194
chr2 816733 0.34% 5438
chr3 692100 0.35% 4611
chr4 573150 0.30% 3816
chr5 592256 0.33% 3942
chr6 624983 0.37% 4158
chr7 540734 0.34% 3598
chr8 490879 0.34% 3267
chr9 427950 0.31% 2851
chr10 466050 0.35% 3103
chr11 530272 0.39% 3533
chr12 526497 0.40% 3507
chr13 296644 0.26% 1975
chr14 323400 0.30% 2150
chr15 316839 0.31% 2112
chr16 335250 0.37% 2232
chr17 392791 0.47% 2617
chr18 243000 0.30% 1619
chr19 376856 0.64% 2511
chr20 256350 0.40% 1708
chr21 102702 0.22% 685
chr22 165900 0.33% 1105
chrX 298330 0.19% 1984
chrY 22800 0.04% 152
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 68868 62 300 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF897BWH.bed.gz 665.13 KB ae6cf912b940e8cf43578678bd48cacc
ENCFF897BWH.tabix.bed.gz 569.97 KB 996d989ad4d69265d04904db7573bd6e
ENCFF897BWH.tabix.bed.gz.tbi 402.21 KB 90fa2b2d207fafa2599f384dca18876e
genomic_resource.yaml 1.27 KB 5ca69f1d7eeb3236b691e4123601aa7e
statistics/