Resource

Id DNase-seq/ENCSR440FZScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR440FZS [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (113 days)"]
Description
Labels
  • accession: ENCSR440FZS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001774/
  • biosample_summary: Homo sapiens muscle of trunk tissue female embryo (113 days)
  • date_created: 2015-09-16T21:42:41.513695+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR440FZS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR440FZS float

DNase-seq_ENCSR440FZS

DNase-seq ENCSR440FZS [biosample_summary="Homo sapiens muscle of trunk tissue female embryo (113 days)"]
HISTOGRAM FOR DNase-seq_ENCSR440FZS [0.0213, 23.7]
n
57,274,933
mean
1.07
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 572749331.78% 264825
chr1 4919623 1.98% 22507
chr2 4793621 1.98% 22173
chr3 3852640 1.94% 17723
chr4 3160858 1.66% 14704
chr5 3368515 1.86% 15572
chr6 3542023 2.07% 16153
chr7 2976934 1.87% 13864
chr8 2841239 1.96% 13091
chr9 2487157 1.80% 11473
chr10 2978100 2.23% 13532
chr11 2758030 2.04% 12781
chr12 2748227 2.06% 12653
chr13 1732090 1.51% 7975
chr14 1877428 1.75% 8602
chr15 1778874 1.74% 8327
chr16 1613704 1.79% 7631
chr17 2134195 2.56% 9928
chr18 1389079 1.73% 6425
chr19 1466868 2.50% 6822
chr20 1404690 2.18% 6536
chr21 710827 1.52% 3300
chr22 877065 1.73% 4173
chrX 1860839 1.19% 8864
chrY 2307 <0.01% 16
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 264825 1 1280 216.27 200
global segment-length histogram

Files

Filename Size md5
ENCFF222NNT.bed.gz 2.8 MB 4d176369c1494a417fc79b3f30cc3ed0
ENCFF222NNT.tabix.bed.gz 2.59 MB 3c209ddbab95ca27d38d41394309943d
ENCFF222NNT.tabix.bed.gz.tbi 728.13 KB b7f2a346f16e5f1c738a9b4258f829f2
genomic_resource.yaml 1.24 KB 0fcd6f0120f7c77991f127bf359b1322
statistics/