Resource

Id DNase-seq/ENCSR438USPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR438USP [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
Description
Labels
  • accession: ENCSR438USP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • date_created: 2020-04-20T23:46:07.656935+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR438USP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR438USP float

DNase-seq_ENCSR438USP
DNase-seq ENCSR438USP [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR438USP [0.447, 34.4]
n
6,651,734
mean
5.91
sd
4.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 66517340.21% 37003
chr1 683690 0.27% 3794
chr2 465446 0.19% 2600
chr3 374075 0.19% 2078
chr4 232655 0.12% 1292
chr5 300808 0.17% 1698
chr6 378556 0.22% 2112
chr7 310658 0.19% 1737
chr8 247176 0.17% 1412
chr9 274192 0.20% 1527
chr10 288780 0.22% 1623
chr11 348409 0.26% 1937
chr12 346524 0.26% 1902
chr13 137077 0.12% 767
chr14 224124 0.21% 1254
chr15 220771 0.22% 1250
chr16 286045 0.32% 1574
chr17 392524 0.47% 2153
chr18 100209 0.12% 569
chr19 451944 0.77% 2404
chr20 183491 0.28% 1049
chr21 72666 0.16% 410
chr22 159263 0.31% 894
chrX 166574 0.11% 933
chrY 6077 0.01% 34
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37003 3 760 179.76 180
global segment-length histogram

Files

Filename Size md5
ENCFF169VKR.bed.gz 401.05 KB 1e0ee06afe2339f8d9ea03405062c4e2
ENCFF169VKR.tabix.bed.gz 359.49 KB 9a9670cc05aabdfe08d179079dcd1188
ENCFF169VKR.tabix.bed.gz.tbi 209.66 KB 892cfb6dedd38572a85b5f907b38b085
genomic_resource.yaml 2.42 KB 95fa241e9e71e329a76c36d4dc58a5b0
statistics/