Resource

Id DNase-seq/ENCSR438TWIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR438TWI [biosample_summary="Homo sapiens muscle of back tissue male embryo (96 days)"]
Description
Labels
  • accession: ENCSR438TWI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (96 days)
  • date_created: 2015-09-16T21:42:58.288174+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR438TWI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR438TWI float

DNase-seq_ENCSR438TWI
DNase-seq ENCSR438TWI [biosample_summary="Homo sapiens muscle of back tissue male embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR438TWI [0.258, 19.9]
n
10,033,465
mean
2.45
sd
2.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100334650.31% 51852
chr1 914232 0.37% 4698
chr2 806587 0.33% 4176
chr3 667711 0.34% 3482
chr4 533890 0.28% 2787
chr5 581439 0.32% 3028
chr6 647663 0.38% 3306
chr7 494880 0.31% 2600
chr8 495422 0.34% 2554
chr9 417629 0.30% 2181
chr10 467859 0.35% 2433
chr11 510501 0.38% 2618
chr12 516091 0.39% 2630
chr13 289257 0.25% 1509
chr14 325000 0.30% 1672
chr15 314326 0.31% 1607
chr16 295692 0.33% 1558
chr17 391478 0.47% 2006
chr18 223615 0.28% 1157
chr19 380104 0.65% 1841
chr20 233089 0.36% 1220
chr21 114448 0.25% 596
chr22 151912 0.30% 797
chrX 250410 0.16% 1353
chrY 10230 0.02% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51852 1 980 193.5 180
global segment-length histogram

Files

Filename Size md5
ENCFF378QIP.bed.gz 542.18 KB e17ccc1e0543d0788698e3b84089dd32
ENCFF378QIP.tabix.bed.gz 486.79 KB 9285928e2c4bb228c4fdc74df594bcf7
ENCFF378QIP.tabix.bed.gz.tbi 285.71 KB 30af85aae1c80af195a2cedb6014b6bb
genomic_resource.yaml 1.84 KB ce31fcb57ede33df2943a165c06694f7
statistics/