Resource

Id DNase-seq/ENCSR437PXYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR437PXY [biosample_summary="Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell"]
Description
Labels
  • accession: ENCSR437PXY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell
  • date_created: 2022-01-25T19:12:18.124806+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR437PXY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR437PXY float

DNase-seq_ENCSR437PXY
DNase-seq ENCSR437PXY [biosample_summary="Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR437PXY [0.108, 63.6]
n
14,976,970
mean
4.43
sd
5.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 149769700.47% 69239
chr1 1490393 0.60% 6846
chr2 1119073 0.46% 5124
chr3 847075 0.43% 3967
chr4 554319 0.29% 2605
chr5 696706 0.38% 3227
chr6 943893 0.55% 4251
chr7 702093 0.44% 3263
chr8 587978 0.41% 2715
chr9 586945 0.42% 2767
chr10 696897 0.52% 3218
chr11 766515 0.57% 3573
chr12 772149 0.58% 3532
chr13 350881 0.31% 1613
chr14 536818 0.50% 2452
chr15 476142 0.47% 2243
chr16 555092 0.61% 2600
chr17 833610 1.00% 3850
chr18 254553 0.32% 1182
chr19 827105 1.41% 3723
chr20 398704 0.62% 1881
chr21 172571 0.37% 808
chr22 316694 0.62% 1508
chrX 490764 0.31% 2291
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69239 2 1080 216.31 200
global segment-length histogram

Files

Filename Size md5
ENCFF810SEM.bed.gz 764.25 KB dc2c89c24bfdeb4d463396f0d40c4f5e
ENCFF810SEM.tabix.bed.gz 705.72 KB 5f5a660636ef4958e834544e4575b629
ENCFF810SEM.tabix.bed.gz.tbi 292.95 KB 1308c327c2b43676172a15cbec3c51b6
genomic_resource.yaml 1.29 KB 38c4c802d90e1a8a11de8c0a2a1fe8e3
statistics/