Resource

Id DNase-seq/ENCSR434OBMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR434OBM [biosample_summary="Homo sapiens foreskin melanocyte male newborn"]
Description
Labels
  • accession: ENCSR434OBM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000045/
  • biosample_summary: Homo sapiens foreskin melanocyte male newborn
  • date_created: 2015-09-16T21:42:14.935791+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR434OBM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR434OBM float

DNase-seq_ENCSR434OBM

DNase-seq ENCSR434OBM [biosample_summary="Homo sapiens foreskin melanocyte male newborn"]
HISTOGRAM FOR DNase-seq_ENCSR434OBM [0.0979, 24]
n
27,166,386
mean
2.05
sd
2.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 271663860.84% 130516
chr1 2468426 0.99% 11865
chr2 2291853 0.95% 11026
chr3 1865487 0.94% 8930
chr4 1557123 0.82% 7550
chr5 1569609 0.86% 7554
chr6 1790654 1.05% 8439
chr7 1422619 0.89% 6860
chr8 1255107 0.86% 6016
chr9 1126630 0.81% 5424
chr10 1287184 0.96% 6180
chr11 1323174 0.98% 6379
chr12 1391707 1.04% 6655
chr13 781324 0.68% 3793
chr14 849927 0.79% 4054
chr15 862974 0.85% 4151
chr16 774156 0.86% 3757
chr17 1009240 1.21% 4781
chr18 637250 0.79% 3100
chr19 743199 1.27% 3522
chr20 651349 1.01% 3119
chr21 313545 0.67% 1495
chr22 392754 0.77% 1919
chrX 768933 0.49% 3778
chrY 32162 0.06% 169
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 130516 1 1020 208.15 200
global segment-length histogram

Files

Filename Size md5
ENCFF513SMY.bed.gz 1.37 MB 15efee5036edb023e11fb3716a4d4a65
ENCFF513SMY.tabix.bed.gz 1.24 MB 914fb5df4dd71a2409f5d1612dbd98f4
ENCFF513SMY.tabix.bed.gz.tbi 551.84 KB 1c6ad138ed86fbfe7e50739b770d6a8c
genomic_resource.yaml 1.17 KB ececf286cfcd2479f1bf730146cd4960
statistics/