Resource
| Id | DNase-seq/ENCSR433WOV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR433WOV [biosample_summary="Homo sapiens activated T-helper 9 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Alignment file {ENCFF089LIB|/files/ENCFF089LIB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47403370 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR433WOV | float |
DNase-seq_ENCSR433WOV |
DNase-seq ENCSR433WOV [biosample_summary="Homo sapiens activated T-helper 9 cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.254, 58.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8255457 | 0.26% | 43378 |
| chr1 | 839377 | 0.34% | 4418 |
| chr2 | 558469 | 0.23% | 2944 |
| chr3 | 448932 | 0.23% | 2326 |
| chr4 | 275525 | 0.14% | 1413 |
| chr5 | 355868 | 0.20% | 1868 |
| chr6 | 488988 | 0.29% | 2563 |
| chr7 | 365137 | 0.23% | 1942 |
| chr8 | 306392 | 0.21% | 1619 |
| chr9 | 334105 | 0.24% | 1759 |
| chr10 | 363062 | 0.27% | 1936 |
| chr11 | 416314 | 0.31% | 2199 |
| chr12 | 432764 | 0.32% | 2256 |
| chr13 | 162812 | 0.14% | 853 |
| chr14 | 294595 | 0.28% | 1541 |
| chr15 | 273605 | 0.27% | 1461 |
| chr16 | 357564 | 0.40% | 1863 |
| chr17 | 516370 | 0.62% | 2680 |
| chr18 | 125691 | 0.16% | 661 |
| chr19 | 563500 | 0.96% | 2917 |
| chr20 | 231774 | 0.36% | 1250 |
| chr21 | 93954 | 0.20% | 508 |
| chr22 | 203081 | 0.40% | 1082 |
| chrX | 247435 | 0.16% | 1318 |
| chrY | 143 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43378 | 2 | 820 | 190.31 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF608HAY.bed.gz | 482.87 KB | 2ed2f55cf41f3eb8a17be92a4f3516d6 |
| ENCFF608HAY.tabix.bed.gz | 438.35 KB | cefe4e2f3f391056859baaac02f50b17 |
| ENCFF608HAY.tabix.bed.gz.tbi | 207.14 KB | 41395bf48b9745cafe68e6bf071aacd0 |
| genomic_resource.yaml | 2.36 KB | 8139c8ebd62a71ad5d7df2c174bcda54 |
| statistics/ |