Resource

Id DNase-seq/ENCSR432QFUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR432QFU [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (73 years)"]
Description
Labels
  • accession: ENCSR432QFU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; head of caudate nucleus tissue male adult (73 years)
  • date_created: 2020-12-10T18:27:49.911829+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR432QFU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (73 years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR432QFU float

DNase-seq_ENCSR432QFU
DNase-seq ENCSR432QFU [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (73 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR432QFU [0.072, 37.3]
n
18,572,475
mean
3.02
sd
3.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 185724750.58% 101310
chr1 1797433 0.72% 9718
chr2 1369652 0.57% 7591
chr3 1073358 0.54% 5855
chr4 776082 0.41% 4238
chr5 936499 0.52% 5153
chr6 1027855 0.60% 5608
chr7 927504 0.58% 5135
chr8 777929 0.54% 4252
chr9 822969 0.59% 4474
chr10 884617 0.66% 4840
chr11 1007489 0.75% 5468
chr12 912537 0.68% 4961
chr13 431313 0.38% 2368
chr14 621235 0.58% 3368
chr15 603427 0.59% 3330
chr16 703532 0.78% 3868
chr17 918534 1.10% 4911
chr18 377961 0.47% 2096
chr19 908362 1.55% 4736
chr20 547349 0.85% 3033
chr21 209837 0.45% 1159
chr22 416417 0.82% 2275
chrX 502121 0.32% 2768
chrY 18463 0.03% 105
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101310 1 900 183.32 180
global segment-length histogram

Files

Filename Size md5
ENCFF911LWH.bed.gz 1.1 MB 413841a349e7c4a01283bf95429792ed
ENCFF911LWH.tabix.bed.gz 1.0 MB d07a84a173b8b0aea0642e38c72f7823
ENCFF911LWH.tabix.bed.gz.tbi 412.28 KB 55e87d13b7a6920922d69e2cbe25d3bb
genomic_resource.yaml 1.5 KB 3bcca2af11c5faf71dd5bf96d4844b8a
statistics/