Resource

Id DNase-seq/ENCSR431UEMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR431UEM [biosample_summary="Homo sapiens left hindlimb tissue male embryo (81 days)"]
Description
Labels
  • accession: ENCSR431UEM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_8300004/
  • biosample_summary: Homo sapiens left hindlimb tissue male embryo (81 days)
  • date_created: 2017-11-01T21:26:56.782500+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR431UEM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (81 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR431UEM float

DNase-seq_ENCSR431UEM

DNase-seq ENCSR431UEM [biosample_summary="Homo sapiens left hindlimb tissue male embryo (81 days)"]
HISTOGRAM FOR DNase-seq_ENCSR431UEM [0.0432, 38]
n
24,692,786
mean
2.05
sd
3.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 246927860.77% 122952
chr1 2298478 0.92% 11431
chr2 1945649 0.80% 9713
chr3 1346394 0.68% 6762
chr4 943978 0.50% 4679
chr5 1160017 0.64% 5909
chr6 1205654 0.71% 5998
chr7 1191518 0.75% 6070
chr8 1017932 0.70% 5132
chr9 1227467 0.89% 6073
chr10 1185455 0.89% 5982
chr11 1464168 1.08% 7286
chr12 1042369 0.78% 5093
chr13 492732 0.43% 2436
chr14 872858 0.82% 4243
chr15 810424 0.79% 4085
chr16 1049348 1.16% 5368
chr17 1469706 1.77% 7186
chr18 493320 0.61% 2487
chr19 1079433 1.84% 5154
chr20 764523 1.19% 3829
chr21 362781 0.78% 1748
chr22 725545 1.43% 3587
chrX 528462 0.34% 2623
chrY 14575 0.03% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 122952 1 1080 200.83 200
global segment-length histogram

Files

Filename Size md5
ENCFF702JFH.bed.gz 1.29 MB 639258c160d56b3d5cfc3b57201c681c
ENCFF702JFH.tabix.bed.gz 1.19 MB 48f7b6a41374faf85d6593e1a6aec18b
ENCFF702JFH.tabix.bed.gz.tbi 367.38 KB efa185b84cc18d6bdf3de73f9efd16c1
genomic_resource.yaml 1.22 KB 66271a8112bcc547ea437f9776ec63ce
statistics/