Resource

Id DNase-seq/ENCSR424MWHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR424MWH [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-21 for 1 hour"]
Description
Labels
  • accession: ENCSR424MWH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-21 for 1 hour
  • date_created: 2018-11-30T18:43:54.651956+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR424MWH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interleukin-21 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR424MWH float

DNase-seq_ENCSR424MWH
DNase-seq ENCSR424MWH [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interleukin-21 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR424MWH [0.0471, 102]
n
18,026,940
mean
5.12
sd
10.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 180269400.56% 91084
chr1 1786416 0.72% 9020
chr2 1335007 0.55% 6762
chr3 1024334 0.52% 5251
chr4 670668 0.35% 3422
chr5 844398 0.47% 4322
chr6 1116092 0.65% 5547
chr7 858263 0.54% 4383
chr8 697597 0.48% 3578
chr9 715857 0.52% 3640
chr10 842580 0.63% 4235
chr11 913836 0.68% 4618
chr12 915379 0.69% 4636
chr13 404688 0.35% 2064
chr14 647392 0.60% 3237
chr15 580672 0.57% 2975
chr16 661098 0.73% 3314
chr17 1004253 1.21% 5004
chr18 307503 0.38% 1578
chr19 1026756 1.75% 4966
chr20 491173 0.76% 2504
chr21 210292 0.45% 1073
chr22 387599 0.76% 1976
chrX 557078 0.36% 2832
chrY 28009 0.05% 147
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91084 2 1100 197.92 200
global segment-length histogram

Files

Filename Size md5
ENCFF982FEJ.bed.gz 1.0 MB e01ec01da364cc8782e67fb1217ab586
ENCFF982FEJ.tabix.bed.gz 939.86 KB 3cab12015354269f9d210cc27adbe272
ENCFF982FEJ.tabix.bed.gz.tbi 345.76 KB bb0c6eef5a6330857b54ea769f37bd7d
genomic_resource.yaml 1.46 KB 197d3fcd064972bbee1ee73739e6bdb9
statistics/