Resource

Id DNase-seq/ENCSR422IIZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR422IIZ [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR422IIZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001496/
  • biosample_summary: Homo sapiens ascending aorta tissue female adult (51 years)
  • date_created: 2019-08-18T16:57:11.603056+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR422IIZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR422IIZ float

DNase-seq_ENCSR422IIZ
DNase-seq ENCSR422IIZ [biosample_summary="Homo sapiens ascending aorta tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR422IIZ [8, 7.58e+03]
n
4,989,201
mean
110
sd
111

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 49892010.16% 33211
chr1 491976 0.20% 3276
chr2 361458 0.15% 2404
chr3 307295 0.15% 2043
chr4 188732 0.10% 1257
chr5 243861 0.13% 1623
chr6 275179 0.16% 1833
chr7 228084 0.14% 1520
chr8 193858 0.13% 1291
chr9 221275 0.16% 1469
chr10 233577 0.17% 1553
chr11 272653 0.20% 1814
chr12 244402 0.18% 1629
chr13 103324 0.09% 688
chr14 159839 0.15% 1064
chr15 178593 0.18% 1187
chr16 207260 0.23% 1380
chr17 273129 0.33% 1821
chr18 81779 0.10% 545
chr19 290655 0.50% 1937
chr20 137921 0.21% 916
chr21 57900 0.12% 386
chr22 105441 0.21% 703
chrX 130410 0.08% 868
chrY 600 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33211 26 428 150.23 150
global segment-length histogram

Files

Filename Size md5
ENCFF406DTA.bed.gz 339.05 KB c242142a53d381ecc4bd0be1b7cd2b82
ENCFF406DTA.tabix.bed.gz 287.33 KB fced49c1e3d7e7a554f7de996843e385
ENCFF406DTA.tabix.bed.gz.tbi 189.63 KB 0aabc44c1cfe205386af11cbeaf95b8e
genomic_resource.yaml 1.41 KB 4630939c316b615240d432ebdb2c5f0a
statistics/