Resource

Id DNase-seq/ENCSR419CKGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR419CKG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
Description
Labels
  • accession: ENCSR419CKG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • date_created: 2020-04-18T22:21:50.843251+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR419CKG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR419CKG float

DNase-seq_ENCSR419CKG
DNase-seq ENCSR419CKG [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR419CKG [0.262, 66.1]
n
6,851,578
mean
7.85
sd
8.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68515780.21% 36073
chr1 704686 0.28% 3719
chr2 476236 0.20% 2504
chr3 364780 0.18% 1921
chr4 234331 0.12% 1220
chr5 296435 0.16% 1578
chr6 389472 0.23% 2047
chr7 311135 0.20% 1655
chr8 247892 0.17% 1305
chr9 277517 0.20% 1455
chr10 291910 0.22% 1554
chr11 353506 0.26% 1877
chr12 352660 0.26% 1828
chr13 138883 0.12% 710
chr14 245503 0.23% 1294
chr15 221827 0.22% 1197
chr16 286294 0.32% 1505
chr17 424164 0.51% 2232
chr18 102103 0.13% 551
chr19 488483 0.83% 2478
chr20 191536 0.30% 1040
chr21 80748 0.17% 427
chr22 170490 0.34% 911
chrX 200987 0.13% 1065
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36073 4 860 189.94 180
global segment-length histogram

Files

Filename Size md5
ENCFF575GIX.bed.gz 398.47 KB 5ac3c5f56e2f3c687bd5b7ddffbe9f9c
ENCFF575GIX.tabix.bed.gz 362.62 KB 664523c69277f7b65a90faffd1d29800
ENCFF575GIX.tabix.bed.gz.tbi 193.38 KB 0e06a8293dbd14f843a3a15b1ac15c31
genomic_resource.yaml 2.43 KB e2c4617ca05b8657831359a21dc0b76a
statistics/