Resource

Id DNase-seq/ENCSR410IYFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR410IYF [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
Description
Labels
  • accession: ENCSR410IYF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (28 years)
  • date_created: 2020-04-12T19:00:07.976046+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR410IYF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (28 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR410IYF float

DNase-seq_ENCSR410IYF

DNase-seq ENCSR410IYF [biosample_summary="Homo sapiens T-cell male adult (28 years)"]
HISTOGRAM FOR DNase-seq_ENCSR410IYF [0.19, 90.8]
n
9,569,270
mean
7.36
sd
10.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 95692700.30% 53707
chr1 964103 0.39% 5372
chr2 676501 0.28% 3821
chr3 529678 0.27% 2974
chr4 334922 0.18% 1866
chr5 431391 0.24% 2442
chr6 565515 0.33% 3151
chr7 444832 0.28% 2522
chr8 353403 0.24% 2004
chr9 380095 0.27% 2170
chr10 439942 0.33% 2464
chr11 487245 0.36% 2756
chr12 487217 0.37% 2733
chr13 198219 0.17% 1107
chr14 343656 0.32% 1924
chr15 311192 0.31% 1773
chr16 384586 0.43% 2164
chr17 572612 0.69% 3179
chr18 162503 0.20% 913
chr19 596760 1.02% 3241
chr20 273169 0.42% 1562
chr21 116454 0.25% 649
chr22 227202 0.45% 1287
chrX 275172 0.18% 1563
chrY 12901 0.02% 70
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53707 1 800 178.18 180
global segment-length histogram

Files

Filename Size md5
ENCFF776FXT.bed.gz 598.57 KB ef4bc199a60ba704577870b3ae316694
ENCFF776FXT.tabix.bed.gz 544.39 KB a22a5d0eac52833e794747987af3d506
ENCFF776FXT.tabix.bed.gz.tbi 251.94 KB a4dd45ce86f24d28c0f1daf1008aea61
genomic_resource.yaml 1.18 KB 51d5704d963a01b2febfc38918d5c56f
statistics/