Resource

Id DNase-seq/ENCSR408GYQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR408GYQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-17A for 4 hours"]
Description
Labels
  • accession: ENCSR408GYQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-17A for 4 hours
  • date_created: 2018-11-30T18:43:54.494288+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR408GYQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years) treated with Interleukin-17A for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR408GYQ float

DNase-seq_ENCSR408GYQ
DNase-seq ENCSR408GYQ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (37 years) treated with Interleukin-17A for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR408GYQ [0.029, 126]
n
16,617,315
mean
6.13
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 166173150.52% 92315
chr1 1638547 0.66% 9155
chr2 1178104 0.49% 6617
chr3 885142 0.45% 4945
chr4 556872 0.29% 3116
chr5 738140 0.41% 4129
chr6 945709 0.55% 5283
chr7 779438 0.49% 4372
chr8 658751 0.45% 3683
chr9 679924 0.49% 3759
chr10 764996 0.57% 4257
chr11 893383 0.66% 4919
chr12 826647 0.62% 4569
chr13 358616 0.31% 1976
chr14 614755 0.57% 3433
chr15 551041 0.54% 3102
chr16 668047 0.74% 3663
chr17 1011690 1.22% 5558
chr18 277363 0.35% 1530
chr19 957813 1.63% 5181
chr20 461888 0.72% 2582
chr21 220212 0.47% 1230
chr22 426931 0.84% 2375
chrX 523044 0.34% 2879
chrY 262 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92315 16 820 180.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF843PMA.bed.gz 1.03 MB 29a91dc369a8cadbe1b04d0267f4cc8a
ENCFF843PMA.tabix.bed.gz 962.78 KB e0924839c52ed2f8aeb0c33ec2a1a0b1
ENCFF843PMA.tabix.bed.gz.tbi 312.57 KB 9edae3d5048f94fe7752636c4637ad34
genomic_resource.yaml 1.47 KB 80c84d5069c9848ed4fc93704b7e9d02
statistics/