Resource

Id DNase-seq/ENCSR405TXUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR405TXU [biosample_summary="Homo sapiens adipocyte"]
Description
Labels
  • accession: ENCSR405TXU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000136/
  • biosample_summary: Homo sapiens adipocyte
  • date_created: 2014-09-30T18:26:53.087869+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR405TXU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR405TXU float

DNase-seq_ENCSR405TXU

DNase-seq ENCSR405TXU [biosample_summary="Homo sapiens adipocyte"]
HISTOGRAM FOR DNase-seq_ENCSR405TXU [2, 147]
n
27,604,000
mean
49.5
sd
27.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 276040000.86% 188795
chr1 2593780 1.04% 17789
chr2 2331850 0.96% 15900
chr3 1887710 0.95% 12865
chr4 1581780 0.83% 10792
chr5 1631170 0.90% 11067
chr6 1721130 1.01% 11753
chr7 1404870 0.88% 9731
chr8 1298280 0.89% 8836
chr9 1176920 0.85% 8056
chr10 1288010 0.96% 8801
chr11 1330660 0.99% 9077
chr12 1394350 1.05% 9501
chr13 776180 0.68% 5260
chr14 866130 0.81% 5880
chr15 864020 0.85% 5912
chr16 786570 0.87% 5470
chr17 1085490 1.30% 7554
chr18 632310 0.79% 4288
chr19 833250 1.42% 5777
chr20 648660 1.01% 4421
chr21 323950 0.69% 2210
chr22 438590 0.86% 3011
chrX 705220 0.45% 4820
chrY 3120 0.01% 24
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 188795 10 390 146.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF154LUC.bed.gz 1.64 MB 77c2e0cd27904e698c7068e38a570b13
ENCFF154LUC.tabix.bed.gz 1.48 MB ab2a83c1ba80fb39a4932a1d02486c80
ENCFF154LUC.tabix.bed.gz.tbi 612.69 KB f40ed33f8abd7ac29969da130d61f50d
genomic_resource.yaml 1.09 KB 56fc06522d80515d274882bf18b12229
statistics/