Resource

Id DNase-seq/ENCSR405FAKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR405FAK [biosample_summary="Homo sapiens suppressor macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR405FAK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000862/
  • biosample_summary: Homo sapiens suppressor macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour
  • date_created: 2022-05-20T16:39:14.396068+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR405FAK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years) treated with lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR011VJK.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR405FAK float

DNase-seq_ENCSR405FAK
DNase-seq ENCSR405FAK [biosample_summary="Homo sapiens suppressor macrophage male adult (40 years) treated with lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR405FAK [0.038, 38.6]
n
35,968,469
mean
2.49
sd
3.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 359684691.12% 199639
chr1 3500963 1.41% 19352
chr2 2815722 1.16% 15730
chr3 2277518 1.15% 12688
chr4 1480618 0.78% 8299
chr5 1881704 1.04% 10451
chr6 2164998 1.27% 11983
chr7 1740860 1.09% 9754
chr8 1618369 1.12% 9018
chr9 1552203 1.12% 8612
chr10 1774588 1.33% 9860
chr11 1816551 1.34% 10034
chr12 1811332 1.36% 10038
chr13 808723 0.71% 4558
chr14 1154480 1.08% 6430
chr15 1210701 1.19% 6746
chr16 1234202 1.37% 6838
chr17 1772964 2.13% 9610
chr18 716982 0.89% 4052
chr19 1454935 2.48% 7843
chr20 1045574 1.62% 5781
chr21 426793 0.91% 2370
chr22 720188 1.42% 3971
chrX 955538 0.61% 5435
chrY 31963 0.06% 186
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 199639 2 900 180.17 180
global segment-length histogram

Files

Filename Size md5
ENCFF248KIO.bed.gz 2.16 MB 9a192db5cffdfa0a823f72970f0e0d04
ENCFF248KIO.tabix.bed.gz 1.97 MB 26b67ac94bb52fe4168c2aa050877572
ENCFF248KIO.tabix.bed.gz.tbi 565.42 KB d8abc735607cb300beb05d7872b3e424
genomic_resource.yaml 1.55 KB c392662ae2ec9ecbfefe104ee65fa311
statistics/