Resource

Id DNase-seq/ENCSR404TSPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR404TSP [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"]
Description
Labels
  • accession: ENCSR404TSP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004992/
  • biosample_summary: Homo sapiens mucosa of descending colon tissue female adult (61 years)
  • date_created: 2019-04-10T20:14:54.321633+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR404TSP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (61 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR404TSP float

DNase-seq_ENCSR404TSP
DNase-seq ENCSR404TSP [biosample_summary="Homo sapiens mucosa of descending colon tissue female adult (61 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR404TSP [0.0443, 49.1]
n
27,734,137
mean
1.73
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277341370.86% 135903
chr1 2393337 0.96% 11604
chr2 1846787 0.76% 9231
chr3 1151096 0.58% 5808
chr4 1084212 0.57% 5348
chr5 1044917 0.58% 5255
chr6 962733 0.56% 4981
chr7 1461514 0.92% 7127
chr8 1128476 0.78% 5383
chr9 1455338 1.05% 6989
chr10 1189878 0.89% 5833
chr11 1777557 1.32% 8500
chr12 1076872 0.81% 5334
chr13 436405 0.38% 2208
chr14 946279 0.88% 4689
chr15 710075 0.70% 3652
chr16 1538947 1.70% 7421
chr17 2087074 2.51% 10053
chr18 371871 0.46% 1916
chr19 1732724 2.96% 8367
chr20 927656 1.44% 4462
chr21 595187 1.27% 2860
chr22 1233428 2.43% 5917
chrX 580019 0.37% 2950
chrY 1755 <0.01% 15
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 135903 1 1140 204.07 190
global segment-length histogram

Files

Filename Size md5
ENCFF157TDQ.bed.gz 1.38 MB e5470d2b70889f535510664d5266dd79
ENCFF157TDQ.tabix.bed.gz 1.29 MB 1d5f4d3a87ad2c8e7463c0549f831530
ENCFF157TDQ.tabix.bed.gz.tbi 291.03 KB 31f788e148ea1e2fa2cef1482cc73838
genomic_resource.yaml 1.27 KB aa1aa09df8d47d9ac5be8cfae7e9c3ef
statistics/