Resource

Id DNase-seq/ENCSR401ESDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR401ESD [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR401ESD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001323/
  • biosample_summary: Homo sapiens tibial nerve tissue female adult (51 years)
  • date_created: 2016-12-28T18:59:36.984236+00:00
  • date_released: 2017-10-01
  • doi: 10.17989/ENCSR401ESD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR401ESD float

DNase-seq_ENCSR401ESD
DNase-seq ENCSR401ESD [biosample_summary="Homo sapiens tibial nerve tissue female adult (51 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR401ESD [1, 8.97e+03]
n
61,913,129
mean
54.2
sd
46.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 619131291.92% 411129
chr1 5399411 2.17% 35852
chr2 5755448 2.38% 38240
chr3 3502624 1.77% 23263
chr4 2249630 1.18% 14918
chr5 3233328 1.78% 21486
chr6 2952912 1.73% 19609
chr7 3188767 2.00% 21181
chr8 2967167 2.04% 19713
chr9 2596354 1.88% 17243
chr10 3938525 2.94% 26137
chr11 2987217 2.21% 19829
chr12 2320049 1.74% 15400
chr13 1769347 1.55% 11754
chr14 1885935 1.76% 12514
chr15 2481462 2.43% 16496
chr16 2260361 2.50% 14997
chr17 2315551 2.78% 15374
chr18 1782411 2.22% 11836
chr19 1689605 2.88% 11213
chr20 1988178 3.09% 13213
chr21 1001942 2.15% 6656
chr22 1504201 2.96% 9994
chrX 2096054 1.34% 13900
chrY 46650 0.08% 311
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 411129 2 544 150.59 150
global segment-length histogram

Files

Filename Size md5
ENCFF424BYY.bed.gz 3.64 MB c3f37dff5a518b90fa793e0af25b03b8
ENCFF424BYY.tabix.bed.gz 3.12 MB fa339556e97b20b761505edbd3ecc4ac
ENCFF424BYY.tabix.bed.gz.tbi 476.08 KB 6d7f9b3b55be62dbd4f5720e949aa559
genomic_resource.yaml 1.4 KB ca99db447fe76f7403f555bab348531f
statistics/