Resource

Id DNase-seq/ENCSR396EWHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR396EWH [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
Description
Labels
  • accession: ENCSR396EWH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000497/
  • biosample_summary: Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • date_created: 2019-08-24T00:09:40.624284+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR396EWH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR396EWH float

DNase-seq_ENCSR396EWH
DNase-seq ENCSR396EWH [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
 HISTOGRAM FOR DNase-seq_ENCSR396EWH [0.0415, 70.7]
n
19,928,891
mean
3.97
sd
6.96

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 199288910.62% 105132
chr1 1941052 0.78% 10230
chr2 1545068 0.64% 8300
chr3 1027454 0.52% 5485
chr4 676950 0.36% 3617
chr5 915729 0.50% 4909
chr6 1001997 0.59% 5297
chr7 939259 0.59% 4996
chr8 812770 0.56% 4366
chr9 860808 0.62% 4554
chr10 901147 0.67% 4823
chr11 1127045 0.83% 5914
chr12 902939 0.68% 4736
chr13 372670 0.33% 1968
chr14 759898 0.71% 3983
chr15 678971 0.67% 3643
chr16 790598 0.88% 4077
chr17 1236309 1.48% 6317
chr18 313241 0.39% 1656
chr19 1053815 1.80% 5285
chr20 615227 0.95% 3276
chr21 295982 0.63% 1573
chr22 604921 1.19% 3223
chrX 532526 0.34% 2780
chrY 22515 0.04% 124
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105132 1 900 189.56 180
global segment-length histogram

Files

Filename Size md5
ENCFF125XVJ.bed.gz 1.14 MB 737f98eeb773550d5ad5d17fccbeaef1
ENCFF125XVJ.tabix.bed.gz 1.05 MB 93dae397b090195ea64bb6bc8dec8dfd
ENCFF125XVJ.tabix.bed.gz.tbi 326.35 KB cea999bb74c9b435e856a1bdc6edf4c8
genomic_resource.yaml 1.79 KB 173530b5e38e721e1a2bc3acb62b5aab
statistics/